PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012337
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 261aa    MW: 30073.3 Da    PI: 4.7832
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012337genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-3053111259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+++ gC +kk+ver+++d ++++itY+++Hnh+
  DCAR_012337  53 SDSWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLAKKQVERCRTDASLLIITYTSSHNHP 111
                  69************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3143113IPR003657WRKY domain
SuperFamilySSF1182905.49E-2649113IPR003657WRKY domain
SMARTSM007745.2E-3652112IPR003657WRKY domain
PROSITE profilePS5081131.15853113IPR003657WRKY domain
PfamPF031066.0E-2554111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDCSPSPSLD LKISEEKSDT QTSKKRKMSE KTVVTVKIEA NENKKHKNEG PPSDSWSWRK  60
YGQKPIKGSP YPRGYYRCST SKGCLAKKQV ERCRTDASLL IITYTSSHNH PNPKELKEEL  120
EQEKEEEQEE EVKIDSLEEP EDRKEVEVKD QGYSFDENVG SEKITSDFHY IHSPLSGSEH  180
QGIISDIKQE EGIQFTENFE NILFDEKEKP LCYPHLMTFA TPKSEENDFF DELGELPTSS  240
SFTSFWRGNF FEDRILIHLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17531131574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270750.35e-83PREDICTED: probable WRKY transcription factor 65
TrEMBLK4EN481e-112K4EN48_PANQU; WRKY4
STRINGVIT_07s0005g01520.t012e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112812025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-38WRKY DNA-binding protein 69